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Accounting for a University IP Licence: Royalties, Milestones and Equity-for-IP

· 7 min read

A university spin-out’s IP agreement is also an accounting document. The upfront fee, the milestone payments, the running royalty and the shares-for-IP transfer each hit the P&L and balance sheet differently. This page sets out how to account for each under FRS 102, what sits on the balance sheet as an intangible, and how the R&D tax relief rules apply when the university does the research.

Four ways a university transfers IP to a spin-out

Route What the company gets What the university gets
Assignment Full legal ownership of the IP Equity, upfront payment, or both
Exclusive licence Exclusive right to use and commercialise in a defined field Equity, upfront fee, milestones, running royalty
Non-exclusive licence Right to use alongside other licensees Usually royalty-weighted, less equity
Equity-for-IP Assignment or exclusive licence in return for shares at par Equity only; the stake IS the payment

The commercial trade-off: a university that takes a smaller equity stake usually takes a running royalty on sales to compensate. One that takes equity only usually negotiates a larger stake. The USIT guides frame the equity range (10–25% for life sciences, 5–10% for software); the royalty rate is case by case.

Accounting for an exclusive licence under FRS 102

FRS 102 Section 18 (Intangible Assets other than Goodwill) applies to acquired intangibles that are separately identifiable, controlled by the entity, and expected to generate future economic benefits. An exclusive IP licence meets the definition.

Initial recognition

The intangible is recognised at cost: upfront fee + any directly attributable costs of acquiring it (legal fees, due diligence costs). Shares issued to the university as consideration are measured at fair value — which at incorporation of a pre-revenue spin-out is usually at or close to par.

Example journal (illustrative; adapt to your chart of accounts):

Amortisation

FRS 102 requires intangibles with a finite useful life to be amortised over that life. For patented IP, the useful life is typically the shorter of the patent’s remaining term and the period of expected commercial benefit. Default assumption in the absence of a reliable estimate: 10 years, straight-line.

Amortisation runs through the P&L as a non-cash charge. It is not deductible for Corporation Tax under the standard corporate intangibles regime for IP created or acquired after 1 July 2020 from a related party unless the “corporate intangibles” conditions apply — this needs case-by-case review (CTA 2009 Part 8).

Impairment

Review for impairment at each reporting date if there is any indicator (failed milestone, superseded tech, loss of key licensee). Write down to recoverable amount.

Accounting for milestone payments

Milestone payments are typically contingent — triggered by regulatory approval, a sales threshold, or a technical event. Under FRS 102, a contingent payment is not recognised as part of the cost of the intangible at acquisition if it is contingent on future events. It is recognised when:

When recognised, the usual treatment is to add it to the cost of the intangible and amortise over the remaining useful life. If the milestone is tied to a specific product launch, the useful life may be re-assessed.

Accounting for running royalties

Running royalties on sales are an operating expense of the period in which the related sales are recognised. They sit in cost of sales (if they relate to units sold) or in administrative expenses, depending on the royalty’s economic character.

Journal:

Royalties are a tax-deductible operating expense under normal Corporation Tax principles.

Equity-for-IP: the tax trap

Shares issued to the university in exchange for the IP are a share-issue transaction, not a cash transaction. For the company, the shares are issued at the fair value of the IP transferred. For the university, this may be a disposal of IP for CGT purposes.

For the founders’ shares subscribed at par alongside the university’s shares at par, the employment-related securities rules apply: if the shares are considered acquired for less than their unrestricted market value, the undervalue is taxable as employment income unless a section 431 election is filed within 14 days. The usual protection is to subscribe for founder shares before the IP enters the company (when the company has no assets, so the shares are worth their nominal value) and file a section 431 election anyway as a belt-and-braces measure. The spoke on spin-out equity covers this in detail.

R&D tax relief when the university does the work

Under the merged R&D scheme (accounting periods beginning on or after 1 April 2024), a UK company gets a 20% R&D expenditure credit (RDEC) on qualifying expenditure. Loss-making R&D-intensive SMEs (where qualifying R&D is 30% or more of total expenditure) get an enhanced rate under the ERIS scheme.

For a spin-out that contracts R&D out to the university, the key questions are:

  1. Who holds the IP from the R&D? Under the merged scheme, the decision-maker — the party that initiated and intended the R&D — is the one that can claim. If the spin-out commissioned the R&D under a licence back of the IP, the spin-out is the decision-maker.
  2. Is the subcontractor UK-based? Qualifying subcontracted R&D must now be performed in the UK (with narrow exceptions). A UK university counts.
  3. What proportion of the payment to the university qualifies? Payments to a university or qualifying body attract a 100% inclusion (vs the 65% restriction for payments to unconnected subcontractors). This is a specific carve-out that benefits spin-outs materially.

Document the R&D in a technical narrative at the time, not retrospectively, and keep the subcontract agreement as supporting evidence. Our R&D tax credits founders’ guide (2026/27) covers the mechanics.

Corporate intangibles and the related-party restriction

The corporate intangibles regime (CTA 2009 Part 8) gives tax deductions for amortisation and impairment of qualifying intangible assets. Important restrictions apply where the IP is acquired from a related party:

A UK university is a related party only if the university or its connected entity holds >25% of the spin-out’s shares, or there is other common control. Most USIT-aligned spin-outs have the university at 5–25% equity, which can sit right on the related-party line. Needs case-by-case review.

What usually sits on a spin-out’s balance sheet at year-end 1

Item Where Typical magnitude
Intangible asset — IP licence Non-current assets £0 to £500,000 depending on upfront fee
Share capital (founders + university) Equity Nominal (£100–£1,000)
Share premium (if advance subscription converted) Equity Round size minus nominal
Accrued royalties Current liabilities Zero if no sales yet
R&D tax credit receivable Current assets Depends on qualifying spend
Deferred grant income Current / non-current liabilities If Innovate UK or similar grant received

What AccTek does on an IP licence

Frequently asked questions

Is a university licence fee R&D-qualifying?

Not the licence fee itself — a licence to use existing IP is not R&D. But subcontracted R&D work paid to the university on an ongoing basis is qualifying under the merged scheme, with a 100% inclusion rate (not the 65% restriction that applies to unconnected subcontractors).

Can we capitalise the upfront IP licence fee?

Yes, under FRS 102 Section 18. It is recognised as an intangible asset at cost and amortised over its useful life.

How are milestone payments to the university taxed?

For the company, when probable and measurable, they add to the cost of the intangible and are amortised. The tax deduction depends on whether the asset is inside the corporate intangibles regime. For the university, milestone receipts are usually trading income.

Do founder shares issued alongside the university’s shares trigger income tax?

Not if the founders subscribed before the IP entered the company (so the shares were worth their nominal value) and a section 431 election was filed within 14 days. Without those steps, the discount from unrestricted market value is taxed as employment income — potentially 45% plus NI.

Is a 10-year amortisation life always right?

Ten years straight-line is a common default where no reliable life can be estimated. The actual life is the shorter of the patent term, the exclusive-licence period, and the expected commercial-benefit period. For a drug under 20-year patent protection with 12 years remaining at licence date, 12 years is more appropriate. Document the judgement.

Official guidance: FRS 102, HMRC Corporate Intangibles Research and Development Manual, R&D tax relief. AccTek is independent of HMRC and GOV.UK.

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Related: university spin-outs and student startups (hub) | spin-out equity & cap table | SEIS/EIS for spin-outs | R&D tax credits founders’ guide | Innovate UK grant accounting

AccTek accountant — expert in sole trader and limited company accounts
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Godwin Pinto ACA (ICAI) is the founder of AccTek and a member of ICPA, with 20+ years of experience in accounting and tax for contractors, startups and SMEs. Previously at PwC.

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